The rear cover is actually towards the front of the car on the end of the transmission. It can be removed with the transmission in the car but the only things you can really check with it off is if you can get the shifter rails in and out of each gear and you can check if the end nuts are tight. You are correct, you cannot verify the condition of the roll pins in the shifter rails until you disassemble the transmission. Those pins don't wear so much as bend or break and once you get to them it will be obvious if they are bad. The pins can be made stronger by sticking smaller ones inside the big ones but they only bend/break because you forced shifts on a bad clutch. Keep the clutch and the hydraulics in good shape and the pins will be fine.